Hi Andreas, all I am including a bit of information on what actually is a SNP on the long the decription of the snp-sites binary. I was also thinking of adding the usage details like:
Usage: snp_sites [-mvph] [-o output_filename] <file> This program finds snp sites from a multi fasta alignment file. -m output a multi fasta alignment file (default) -v output a VCF file -p output a phylip file -o specify an output filename -h this help message <file> input alignment file which can optionally be gzipped Do you think this should be included in the long decription? Also for the run time library package, I have written this spiel: Installation of the shared library of the snp-sites is done through this package. This library allows python bindings through the Boost python Library. For the development library package I now have this: Both static libraries and header files of the snp-sites program are installed through this package. What are your thoughts on this? Regards, Jorge On Mon, Jan 13, 2014 at 5:09 PM, Jorge Sebastião Soares < [email protected]> wrote: > Hey Andreas, > > > On Mon, Jan 13, 2014 at 5:04 PM, Andreas Tille <[email protected]> wrote: > >> Hi Jorge, >> >> On Mon, Jan 13, 2014 at 04:58:28PM +0000, Jorge Sebastião Soares wrote: >> > > W: snp-sites source: out-of-date-standards-version 3.9.3 (current is >> > > 3.9.5) >> > > >> > > which is probably hidden from your sight if you do not use the latest >> > > lintian >> > > from Debian unstable. >> > >> > >> > That's correct. >> > I am only building against a Sid base package. My own environment is >> > actually wheezy. >> > I did this simply because Sid was a bit unreliable running as a VM in >> > VirtualBox (I have a macintosh machine where I run my Debian VM). >> >> While in principle unstable should work fine in a VM I have posted here >> several times how to use lintian from unstable inside a stable >> environment. You should probably seek the mailing list via keywords >> like >> >> site:lists.debian.org/debian-med lintian from unstable >> /etc/apt/preferences.d >> >> (untested - feel free to ask for more hints in case this does not reveal >> anything helpful) >> >> > Sascha has just filled me in on how to do this. > I will do this first thing in the morning. > Mostly for future packages. > > But I will definitely have a look at the mailing list. > > Regards, > > Jorge > >
