----- Mail original ----- > De: "Charles Plessy" <[email protected]> > À: [email protected] > Envoyé: Lundi 18 Août 2014 08:05:00 > Objet: Replacement of SAMtools 0.19 by SAMtools 1.0. > > Dear all, > > A few days ago, SAMtools was updated to upstream version 1.0 and is now built > on the HTSlib.
Hi Charles, do you know, by chance, what is the difference between samtools and the net.sf.samtools Java lib of picard-tools ? They look quite the same. The HTSlib fix an issue forigv (on SAMFileWriterFactory), but SAMFileWriterFactory class in picard-tools is not the same than the one in HTSlib. Thanks Olivier > > With such an extensive change, on might worry about subtle breakages of > existing > toolschains. > > SAMtools users are welcome to try to build packages from Git > (http://anonscm.debian.org/cgit/debian-med/samtools.git) and to report > problems. > > I hope to updload an update to Experimental after the HTSlib 1.0 makes it in > our archive (and it is not yet uploaded to NEW…). > > Have a nice day, > > Charles > > -- > Charles Plessy > Debian Med packaging team, > http://www.debian.org/devel/debian-med > Tsurumi, Kanagawa, Japan > > > -- > To UNSUBSCRIBE, email to [email protected] > with a subject of "unsubscribe". Trouble? Contact [email protected] > Archive: https://lists.debian.org/[email protected] > > -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: https://lists.debian.org/[email protected]
