Hi,
I tried to upgrade the Debian package of python-pysam to the latest upstream
version
but realised two major problems:
1. We would like to link against the Debian packaged copy of htslib but it
seems the code copy inside python-pysam relies on symbols only available
in version 0.0.1 while Debian currently has 0.2.0. This is discussed on
our mailing list here[1].
2. Even if I try to ignore the Debian packaged version and use the internal
code copy the test suite fails as well since the file TestUtils-py seems
to be missing:
PYTHONPATH=/tmp/buildd/python-pysam-0.8.0/.pybuild/pythonX.Y_2.7/build
python2.7 ./tabix_test.py
Traceback (most recent call last):
File "./pysam_test.py", line 15, in <module>
from TestUtils import checkBinaryEqual
ImportError: No module named TestUtils
Any help to solve this issues would be appreciated.
Kind regards and thanks for providing pysam as free software
Andreas.
[1] https://lists.debian.org/debian-med/2014/08/msg00091.html
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