Hi, I've got some request to package mugsy which I started in Git[1]. The source contained several code copies. I think I sorted out the code copy of mummer by adding the patches contained in mugsy to the Debian packaged mummer (see my last upload).
I also tried to get rid of the outdated seqan copy but this creates several issues of kind In file included from mugsy/mugsy.cpp:36:0: mugsy/rna_alphabet.h:183:40: error: conflicting declaration 'typedef class seqan::SimpleType<unsigned char, seqan::_Rna> seqan::Rna' typedef SimpleType<unsigned char,_Rna> Rna;^M ^ In file included from /usr/include/seqan/basic/basic_alphabet.h:90:0, from /usr/include/seqan/basic.h:68, from mugsy/mugsy.cpp:29: /usr/include/seqan/basic/alphabet_residue.h:402:41: note: previous declaration as 'typedef class seqan::SimpleType<unsigned char, seqan::Rna_> seqan::Rna' typedef SimpleType<unsigned char, Rna_> Rna; ^ In file included from mugsy/mugsy.cpp:36:0: mugsy/rna_alphabet.h:185:20: error: redefinition of 'struct seqan::ValueSize<seqan::SimpleType<unsigned char, seqan::Rna_> >' template <> struct ValueSize< Rna > { enum { VALUE = 4 }; };^M ^ In file included from /usr/include/seqan/basic/basic_alphabet.h:90:0, from /usr/include/seqan/basic.h:68, from mugsy/mugsy.cpp:29: /usr/include/seqan/basic/alphabet_residue.h:405:8: error: previous definition of 'struct seqan::ValueSize<seqan::SimpleType<unsigned char, seqan::Rna_> >' struct ValueSize<Rna> ^ In file included from mugsy/mugsy.cpp:36:0: mugsy/rna_alphabet.h:186:20: error: redefinition of 'struct seqan::BitsPerValue<seqan::SimpleType<unsigned char, seqan::Rna_> >' template <> struct BitsPerValue< Rna > { enum { VALUE = 2 }; };^M ^ ... Just use git-buildpackage on [1] to see more of them. My C++ knowledge is basically zero so I do not feel able to fix this what seems to be a simple task for a C++ programmer. Before I'll direct this question to debian-mentors I'd like to test whether I can get some help on our list. Kind regards Andreas. [1] git://anonscm.debian.org/debian-med/mugsy.git -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150415073929.gb...@an3as.eu