Hi, Charles, على الأربعاء 23 كانون الأول 2015 19:41، كتب Charles Plessy: > Le Wed, Dec 23, 2015 at 07:00:25PM -0800, Afif Elghraoui a écrit : >> >> Specifically, I was looking to package lofreq [1], but it requires the >> samtools headers and its static library libbam.a, expecting users to >> have a compiled copy of the source distribution for samtools. > > for the works that expect libbam.a and legacy samtools headers, we still > distribute the libbam-dev package, from the samtools-legacy package. >
lofreq requires at least samtools 1.1. I did try using the libbam-dev package for this, but it wasn't compatible. In any case, I think there is a similar situation with pysam and the samtools R-bindings, but that they just distribute code copies. What do you think? Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
