على الأربعاء 23 كانون الأول 2015 21:13، كتب Charles Plessy: > Le Wed, Dec 23, 2015 at 08:01:07PM -0800, Afif Elghraoui a écrit : >> >> lofreq requires at least samtools 1.1. I did try using the libbam-dev >> package for this, but it wasn't compatible. >> >> In any case, I think there is a similar situation with pysam and the >> samtools R-bindings, but that they just distribute code copies. > > how about asking to the lofreq authors if they can use the htslib directly > instead of libbam ? >
They use both htslib and the samtools static libraries. I can ask to see what can be done. > If not, it should be easy to add a samtools-dev package as you proposed. > Ok. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
