I almost have something, but while I tried to execute provided tests, it appeared that library expects a "backend" (a .so file), as per specified in doc description:
".... The engine for accessing SRA data is contained within the sister repository ncbi-vdb." while this backend is not mandatory as library supports multiple backend, I think it might be necessary to package this one to get htsjdk fully functional. Olivier On 01/04/2016 12:06 PM, Olivier Sallou wrote: > > > > -------- Forwarded Message -------- > Subject: Re: htsjdk > Date: Mon, 4 Jan 2016 12:06:45 +0100 > From: Olivier Sallou <[email protected]> > To: Andreas Tille <[email protected]> > > > > On 01/04/2016 11:33 AM, Andreas Tille wrote: > > On Mon, Jan 04, 2016 at 10:23:29AM +0000, olivier sallou wrote: > >> Le lun. 4 janv. 2016 à 11:15, olivier sallou <[email protected]> a > >> écrit : > >> > >>> it seems that new release requires ngs-java [0] to build. Did you already > >>> worked on this ? If not, I will need to make this package first. > >>> > >>> > >>> [0] https://github.com/ncbi/ngs/tree/master/ngs-java > >>> > >> it seems you built ngs-sdk which should contain expected jar files. I > >> cloned repository but I cannot build it: > >> > >> "upstream/1.2.3 is not a valid treeish" > > Strange. > > > >> furthermore changelog shows "UNRELEASED". Did you pushed all your updates? > > Pushed (sorry for always forgetting ...). > maybe tags were not pushed either, git tag only returns upstream/1.0.0, > not expecting release 1.2.3 > > > > Kind regards > > > > Andreas. > > > > -- > Olivier Sallou > IRISA / University of Rennes 1 > Campus de Beaulieu, 35000 RENNES - FRANCE > Tel: 02.99.84.71.95 > > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 > > > -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
