On 01/05/2016 11:42 AM, Olivier Sallou wrote: > > On 01/05/2016 11:29 AM, Andreas Tille wrote: >> Hi Olivier, >> >> On Tue, Jan 05, 2016 at 11:12:13AM +0100, Olivier Sallou wrote: >>> I updated (locally) ngs-sdk to create Java bindings and get it created. >>> >>> I tried to use it with htsjdk for validation, but most of tests fail >>> (though maybe not related to the Java lib itself). >>> It ran 22704 tests, but 229 tests fail. It gonna be hard to debug.... >> In some packages (recently python-cogent) I decided to exclude parts of >> the test suite. This at least documents what tests are failing and puts >> this on a todo list for later inspection. My guess is that if we do not >> provide the Debian packages people will install the software manually >> without running the tests and might have the very same problems as in >> the package without noticing. Creating a bug report in addition with >> something like "Please fix problems if full test suite is activated" >> would raise the awareness of the issues which otherwise simply stay >> hidden. >> >> What do you think? > well, without understanding test failure it is an issue as package may > not be functional.... though my workaround may not be clean (setting LC_ALL for locale), all tests passed with this. I will try to update ngs-sdk will Java binding, then upload htsjdk is everything is fine >> Kind regards >> >> Andreas. >>
-- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
