Indeed, looks like incompatible classes between versions Olivier
Le jeu. 24 mars 2016 17:28, Andreas Tille <[email protected]> a écrit : > Hi, > > I've just injected surankco[1] which failed to build with: > > jh_build --javacopts='-target 1.7' --javacopts='-source 1.7' surankco.jar > src > find src -name *.java -and -type f -print0 | xargs -s 512000 -0 > /usr/lib/jvm/default-java/bin/javac -g -cp > /usr/share/java/htsjdk.jar:debian/_jh_build.surankco -d > debian/_jh_build.surankco -target 1.7 -source 1.7 > warning: [options] bootstrap class path not set in conjunction with > -source 1.7 > src/de/rki/ng4/surankco/data/Reads.java:30: error: incompatible types: > Reads cannot be converted to FastqReads > new Qual(filename, this); > ^ > src/de/rki/ng4/surankco/data/Reads.java:33: error: incompatible types: > Reads cannot be converted to FastqReads > new Fastq(filename, this, parameter); > ^ > Note: Some messages have been simplified; recompile with -Xdiags:verbose > to get full output > 2 errors > 1 warning > > > Since upstream jar came with htsjdk-1.128.jar included and the build was > done agains libhtsjdk-java 2.0.1 I suspect an API change. Any hint how > to fix this? > > Kind regards > > Andreas. > > > [1] https://anonscm.debian.org/git/debian-med/surankco.git > > -- > http://fam-tille.de >
