I will have a look today Le jeu. 24 mars 2016 18:44, olivier sallou <[email protected]> a écrit :
> Indeed, looks like incompatible classes between versions > > Olivier > > Le jeu. 24 mars 2016 17:28, Andreas Tille <[email protected]> a écrit : > >> Hi, >> >> I've just injected surankco[1] which failed to build with: >> >> jh_build --javacopts='-target 1.7' --javacopts='-source 1.7' surankco.jar >> src >> find src -name *.java -and -type f -print0 | xargs -s 512000 -0 >> /usr/lib/jvm/default-java/bin/javac -g -cp >> /usr/share/java/htsjdk.jar:debian/_jh_build.surankco -d >> debian/_jh_build.surankco -target 1.7 -source 1.7 >> warning: [options] bootstrap class path not set in conjunction with >> -source 1.7 >> src/de/rki/ng4/surankco/data/Reads.java:30: error: incompatible types: >> Reads cannot be converted to FastqReads >> new Qual(filename, this); >> ^ >> src/de/rki/ng4/surankco/data/Reads.java:33: error: incompatible types: >> Reads cannot be converted to FastqReads >> new Fastq(filename, this, parameter); >> ^ >> Note: Some messages have been simplified; recompile with -Xdiags:verbose >> to get full output >> 2 errors >> 1 warning >> >> >> Since upstream jar came with htsjdk-1.128.jar included and the build was >> done agains libhtsjdk-java 2.0.1 I suspect an API change. Any hint how >> to fix this? >> >> Kind regards >> >> Andreas. >> >> >> [1] https://anonscm.debian.org/git/debian-med/surankco.git >> >> -- >> http://fam-tille.de >> >
