Hi Andreas, When I run debuild -us -uc -b - for the first time, all goes fine. When I run the same command again, I've got error message. Full error log is in attached file.
2016-07-05 18:10 GMT+03:00 Andreas Tille <[email protected]>: > Hi Tanya, > > On Tue, Jul 05, 2016 at 04:39:18PM +0300, merlettaia wrote: > > Hi Andreas, > > I added descriptions for these packages (and they are ready for upload): > > > > > librg-blast-parser-perl, librg-utils-perl, > > > librostlab, librostlab-blast, > > > libzerg, libzerg-perl, > > > profisis, rate4site. > > > > For libzerg > > Uploaded. I switched to debhelper 9 (as we should always settle to) and > also used d-shlibs (since debhelper 9 required some changes in the > install method anyway and I like to use d-shlibs which prevents you from > several errors that can occure for library packaging). > > > and libzerg-perl, > > Uploaded. > > > I haven't fixed lintian warning > > `obsolete-url-in-packaging` yet - probably it should be overrided? Both > > libraries are available only on code.google.com archive. > > I have at least removed this from debian/upstream/metadata since the > homepage field is redundant there anyway (and IMHO should not be > duplicated). > > > Regarding pdb2pqr, I couldn't made it work with apbs for now, that's why > > added more detailed description in readme.test and readme.debian (it > seems > > that current upstream apbs version doesn't produce files which pdb2pqr > > uses. > > I've just created a new changelog paragraph to record these changes. > May be we find another reason to upload this package. > > > Probably this should be considered as a bug?). > > Feel free to file a bug report. > > > `Reprof` isn't finished yet. There is a problem with second package's > build > > - it ends with error messages and fails. > > What exact message. I can't reproduce this problem. For me the package > builds nicely. > > > For now I'll add tests for profphd, profphd-utils and profnet and try to > > fix reprof. > > Fine for creating the other tests but please be more verbose on the reprof > issue to make sure we are talking about the same thing. > > Thanks for your work > > Andreas. > > -- > http://fam-tille.de > > -- Best wishes, Tanya.
dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package reprof dpkg-buildpackage: info: source version 1.0.1-3 dpkg-buildpackage: info: source distribution UNRELEASED dpkg-buildpackage: info: source changed by Tatiana Malygina <[email protected]> dpkg-source --before-build reprof-1.0.1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean make -j1 distclean make[1]: Entering directory '/data/src/reprof/reprof-1.0.1' Making distclean in share make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/share' test -z "" || rm -f rm -f Makefile make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/share' Making distclean in lib make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/lib' Making distclean in RG make[3]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG' Making distclean in Reprof make[4]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG/Reprof' test -z "" || rm -f rm -f Makefile make[4]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG/Reprof' Making distclean in . make[4]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG' rm -f Reprof.pm test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[4]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG' rm -f Makefile make[3]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG' Making distclean in . make[3]: Entering directory '/data/src/reprof/reprof-1.0.1/lib' test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[3]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib' rm -f Makefile make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib' Making distclean in scripts make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/scripts' rm -f reprof.1 test -z "" || rm -f rm -f Makefile make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/scripts' Making distclean in examples make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/examples' test -z "" || rm -f rm -f Makefile make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/examples' Making distclean in . make[2]: Entering directory '/data/src/reprof/reprof-1.0.1' if [ -e Build ]; then perl Build clean && rm -f Build build-stamp; fi test -z "Build.PL reprof.spec" || rm -f Build.PL reprof.spec rm -rf _build MYMETA.yml reprof.spec rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1' rm -f config.status config.cache config.log configure.lineno configure.status.lineno rm -f Makefile make[1]: Leaving directory '/data/src/reprof/reprof-1.0.1' dh_autotools-dev_restoreconfig for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete dh_clean rm -f debian/debhelper-build-stamp rm -f debian/reprof.substvars rm -f debian/reprof.*.debhelper rm -rf debian/reprof/ rm -f debian/librg-reprof-bundle-perl.substvars rm -f debian/librg-reprof-bundle-perl.*.debhelper rm -rf debian/librg-reprof-bundle-perl/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autotools_dev dh_testdir dh_update_autotools_config dh_autotools-dev_updateconfig for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating examples/Makefile config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Reprof/Makefile config.status: creating reprof.spec config.status: creating scripts/Makefile config.status: creating share/Makefile configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build make -j1 make[1]: Entering directory '/data/src/reprof/reprof-1.0.1' Making all in examples make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/examples' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/examples' Making all in scripts make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/scripts' sed -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "reprof" | \ pod2man -c 'User Commands' -r "1.0.1" -name REPROF > "reprof.1" make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/scripts' Making all in lib make[2]: Entering directory '/data/src/reprof/reprof-1.0.1/lib' Making all in RG make[3]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG' Making all in Reprof make[4]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/data/src/reprof/reprof-1.0.1/lib/RG' make[4]: *** No rule to make target '*.pm', needed by 'all-am'. Stop. make[4]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG' Makefile:164: recipe for target 'all-recursive' failed make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib/RG' Makefile:160: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/data/src/reprof/reprof-1.0.1/lib' Makefile:190: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/data/src/reprof/reprof-1.0.1' dh_auto_build: make -j1 returned exit code 2 debian/rules:8: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 debuild: fatal error at line 1376: dpkg-buildpackage -rfakeroot -D -us -uc -b failed
