On Fri, Jan 27, 2017 at 02:51:27PM +0000, Ghislain Vaillant wrote: > > Looks like the system BWA and FML have conflicting bseq1_t > declaration. > > I noticed that upstream is using personal forks of BWA and FML, not the > upstream ones. If you look for bseq1_t in the SeqLib clones of BWA and > FML, no definition appears. However, they do appear in the respective > upstream repositories. > > Looks like upstream had to patch the BWA and FML code bases to be able > to mix them without a multiple-definition error. I am not sure you can > get away from it.
Thanks for the quick response. I've opened https://github.com/walaj/SeqLib/issues/13 May be I might also address BWA and FML upstream - lets wait for a response first. Kind regards Andreas. -- http://fam-tille.de
