On Fri, 2017-01-27 at 16:10 +0100, Andreas Tille wrote: > On Fri, Jan 27, 2017 at 02:51:27PM +0000, Ghislain Vaillant wrote: > > > > Looks like the system BWA and FML have conflicting bseq1_t > > declaration. > > > > I noticed that upstream is using personal forks of BWA and FML, not the > > upstream ones. If you look for bseq1_t in the SeqLib clones of BWA and > > FML, no definition appears. However, they do appear in the respective > > upstream repositories. > > > > Looks like upstream had to patch the BWA and FML code bases to be able > > to mix them without a multiple-definition error. I am not sure you can > > get away from it. > > Thanks for the quick response.
You're welcome. > I've opened > > https://github.com/walaj/SeqLib/issues/13 > > May be I might also address BWA and FML upstream - lets wait for a > response first. Both APIs are incompatible, so they should be made aware of it regardless of what happens in SeqLib. Ghis
