Hi Andreas, Thank you for the answer - I am dealing with a fair share of sequencing data, and some of the programs I use are not packaged (as far as I know). So I would suggest tools that I use indeed, of which either Bandage [0] or Unicycler [1] may be a good start. I had a chance to help debug a bit Unicycler with Ryan (the author) and it was a very nice exchange.
Does that sound good? I can think of other suggestions should those prove too difficult. With kind regards, Cedric [0] https://github.com/rrwick/Bandage/ [1] https://github.com/rrwick/Unicycler ________________________________________ From: Andreas Tille <[email protected]> Sent: Friday, July 14, 2017 9:06 AM To: Cédric Lood Cc: [email protected] Subject: Re: Participation to Debian Med Hi Cédric, thanks for your interest in Debian Med. On Thu, Jul 13, 2017 at 01:21:24PM +0000, Cédric Lood wrote: > I am contacting you after having been lurking for some time the Debian Med > project and would like to help out. I have some experience with using Linux > (my own background being in CS and bioinfo), and I have an interest to learn > the tricks of the trade behind the maintenance of packages. So far, I have > been reading the project's group policy and discovered you had a mentoring > program - I would like to enter that program if anyone would be willing to > pair up. Sounds very good. > You can reach me here, or via IRC (altersid on freenode/debian). I admit I prefer communication via e-mail list but if needed I'm fine to schedule IRC meetings outside office hours. The only time when I'm available on IRC fully is at DebConf - which will be in August. ;-) You can find the mentoring program here https://wiki.debian.org/DebianMed/MoM Feel free to pick some program that might be used by you but is not yet packaged for Debian or pick from our todo list starting here https://blends.debian.org/med/tasks/bio#pkgvcs-debs what you might consider interesting for your work and we can start with the mentoring. > Looking forward to hear from you, Kind regards Andreas. -- http://fam-tille.de
