Dear Andreas, On Fri, 6 Jul 2018 at 10:04 Liubov Chuprikova <[email protected]> wrote:
> > Here upstream implemented [1] this function `uint64_msbit` for x86-64 [2] > and for Windows, presumably. But it was not defined for i386, so there is a > warning during the build [3]: > > warning: implicit declaration of function 'uint64_msbit'; did you mean > 'uint32_msbit'? > > I made an effort to build on i386 after declaring of `uint64_msbit`. However, it still failed to compile *fasterq-dump *which is a new tool that appered in 2.9.1. The error was: ..sra-sdk-2.9.1-1+dfsg/tools/fasterq-dump/progress_thread.c:43:10: fatal error: atomic64.h: No such file or directory Just providing atomic64.h does not solve the problem: this file declares other functions for 64-bit atomics and I also do not know how the operations can be done for 32-bit. So one option that I see is to exclude *fasterq-dump* from a list of tools for 32-bit architectures, particularly as there is *fastq-dump* with the same functionality. What would you suggest? With regards, Liubov > [1] > https://github.com/ncbi/ncbi-vdb/commit/ec24d0c332cdb738a2f4516ad8bf53dd55743457 > [2] > https://github.com/ncbi/ncbi-vdb/blob/f016c209f0a348136abce1966d8a74932eb47658/interfaces/cc/gcc/x86_64/arch-impl.h#L138 > [3] > https://buildd.debian.org/status/fetch.php?pkg=ncbi-vdb&arch=i386&ver=2.9.1-1%2Bdfsg-1&stamp=1530160846&raw=0 >
