I fixed htsjdk and pushed my updates. I can upload the package unless you want additional updates.
I gonna look at picard-tools On 09/18/2018 09:24 AM, Olivier Sallou wrote: > > On 09/18/2018 09:15 AM, Olivier Sallou wrote: >> On 09/17/2018 05:36 PM, Andreas Tille wrote: >>> On Mon, Sep 17, 2018 at 04:55:50PM +0200, Olivier Sallou wrote: >>>> I can't find any git update on salsa for htsjdk (last update 1 month >>>> ago), forgot to push? >>> Ups, please check again. >> better, but getting errors: >> >> ... >> gbp:info: Creating /opt/debian/build-area/htsjdk_2.16.1+dfsg.orig.tar.xz >> gbp:error: Error creating htsjdk_2.16.1+dfsg.orig.tar.xz: Pristine-tar >> couldn't checkout "htsjdk_2.16.1+dfsg.orig.tar.xz": fatal: Path >> 'htsjdk_2.16.1+dfsg.orig.tar.xz.delta' does not exist in >> 'refs/heads/pristine-tar' > sorry, was an update issue.... >>> BTW, regarding picard-tools. >>> >>> The patch >>> >>> --- build.gradle >>> +++ build.gradle >>> @@ -68,13 +64,14 @@ >>> exclude module: 'htsjdk' >>> } >>> compile 'com.google.guava:guava:15.0' >>> + compile 'org.broadinstitute:gatk-native-bindings:debian' >>> compile 'com.github.samtools:htsjdk:' + htsjdkVersion >>> compile 'org.broadinstitute:barclay:2.0.0' >>> compileOnly googleNio >>> >>> // javadoc utilities; compile/test only to prevent redistribution of >>> sdk jars >>> >>> >>> did not applied. It seemed to me that upstream found some replacement. >>> I also tried adding it with no change of the issue. >>> >>> Kind regards >>> >>> Andreas. >>> -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
