Hi Shayan,

On 2019-07-03 15:02, [email protected] wrote:
> Is this where I now have to rely on the pre-built gatb-core package that 
> already exists within sid and testing as a build dependency by editing the 
> rules and control file instead of going down this route?

Yes. Ideally, mindthegap should use system-provided (Debian packaged)
gatb-core to build.

> I was thinking of quilt patching but I don't think that's the way to do it.

This is usually the only way. Some CMakefiles are able to detect
system-provided libraries, however, sometimes one has to patch them.

Best,
Andrius

-- 
Andrius Merkys
Vilnius University Institute of Biotechnology, SaulÄ—tekio al. 7, room V325
LT-10257 Vilnius, Lithuania

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