Hi Steffen, so first of all proteinortho doesnt need python (it just enables synteny analysis) but is not required for the usage of the "main"-program. Next proteinortho_ffadj_mcs.py only runs with python2 and is not compatible with python3 yet. In the future we want to remove the python part entirely from this project and rewrite proteinortho_ffadj_mcs.py in perl.
Best regards, Paul Steffen Möller <[email protected]> schrieb am Sa. 27. Juli 2019 um 13:30: > Hi Paul, hi Andreas, > > I just had a look at > https://salsa.debian.org/med-team/proteinortho/blob/master/debian/control > and found the dependency on plain good ole "python", which the version 2 > of python and not (as one would rightously assume just any version of > python. Should this possibly be "python3", instead? In my understanding > this is why the package is not transitioning to testing as Debian > currently attempts to remove Python2 from the distribution. > > Best, > > Steffen > > On 17.07.19 16:26, Andreas Tille wrote: > > Hi Paul, > > > > On Wed, Jul 17, 2019 at 03:30:49PM +0200, Paul Klemm wrote: > >> I would like to test the package but i cannot find proteinortho 6.0.6 > >> neither with apt-get install nor apt-cache search. Or is it too early? > > New packages are uploaded to Debian unstable. You need to add this to > > your sources.list (but be carefully and set your apt_preferences > > properly - otherwise the system tries to upgrade your whole system to > > unstable!) Or you download from here: > > > > https://tracker.debian.org/pkg/proteinortho > > > > and install it manually. > > > > Hope this helps > > > > Andreas. > > > >> On Tue, Jul 16, 2019 at 10:51 AM Andreas Tille <[email protected]> > wrote: > >> > >>> Hi Paul, > >>> > >>> On Tue, Jul 16, 2019 at 08:59:14AM +0200, Paul Klemm wrote: > >>>> Hey Andreas, > >>>> Sorry for the confusion, I was not aware of any rules. > >>> No problem to sort things out. :-) > >>> > >>>> And thank you very > >>>> much for your time and effort. > >>> You are welcome. It would help if you could test the package and > report > >>> any issue you might face. > >>> > >>> Kind regards > >>> > >>> Andreas. > >>> > >>>> Kind regards, Paul > >>>> > >>>> On Mon, Jul 15, 2019 at 8:52 PM Andreas Tille <[email protected]> > wrote: > >>>> > >>>>> Hi Paul, > >>>>> > >>>>> On Sat, Jul 13, 2019 at 05:06:05PM +0200, Andreas Tille wrote: > >>>>>> If you talk about a PR the source is probably on some Git repository > >>>>>> (which I'm not aware about). Please let me know the Git repository > >>>>>> and if there is a release tag it accordingly (we usually do not > >>>>>> package random commits or pull requests). > >>>>> I've now understood that you created a clone of the packaging > >>> repository > >>>>> in salsa and tried to upgrade the packaging. I admit I just copied > >>> your > >>>>> work in the debian/ dir and commited this to the packaging > repository. > >>>>> I really appreciate your intend to help, but there are some rules > >>>>> specified in Debian Med team policy[1] which are simplifying the > >>>>> maintenance in the team. You are happily invited to be guided into > >>>>> these rules. Otherwise it might be easier if you simply ping here on > >>>>> the list that some new upstream version is out. Usually its a quite > >>>>> automatic process to upgrade (but the proteinortho 6.x series was > >>> hidden > >>>>> for our tools since the download location had changed - this kind of > >>>>> change is very important to know for the packaging). > >>>>> > >>>>> Kind regards and thanks for your effort in any case > >>>>> > >>>>> Andreas. > >>>>> > >>>>> [1] https://med-team.pages.debian.net/policy/ > >>>>> > >>>>> -- > >>>>> http://fam-tille.de > >>>>> > >>>>> > >>>> -- > >>>> Paul Klemm > >>>> Department of Pharmaceutical Chemistry > >>>> Philipps-University Marburg > >>>> Marbacher Weg 6, 35037 Marburg, Germany > >>>> Phone: +49 (0)6421 28 22870 > >>>> Mobile: +49 (0)178 1387867 > >>> -- > >>> http://fam-tille.de > >>> > >>> > >> -- > >> Paul Klemm > >> Department of Pharmaceutical Chemistry > >> Philipps-University Marburg > >> Marbacher Weg 6, 35037 Marburg, Germany > >> Phone: +49 (0)6421 28 22870 > >> Mobile: +49 (0)178 1387867 > > > >
