Thanks for finding the mummer4 package, Ben. On 10/04/2020 12:44, Ben Tris wrote: I don't understand that search string, can't make up what exactly was searched on.
For the record, that link was to papers citing Kurtz 2004 - in scholar's usual unreadable api style. The https://mummer4.github.io/ homepage cites the 2018 PLOS article as the canonical citation: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005944 This paper suggests two innovations for mummer4 - longer genomes (not directly relevant for covid19) and parallelisation. I would recommend prioritising mummer3 over 4 but ultimately the majority of bioinformaticians will prefer mummer4. Slainté, Jim. -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org<http://www.jalview.org> | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> The University of Dundee is a registered Scottish Charity, No: SC015096
