Hi again,
I think it was some enhancement to follow Aarons hint to use blastdb
format 5. However, the test keeps in failing for i386 and armhf
architecture. For armhf the log[1] says:
Error occurred: Exception
Creating tmpDir...
Using /tmp/autopkgtest-lxc.0rcgyf45/downtmp/autopkgtest_tmp/metastudent3yybmcjr
Copying input file to tmpDir...
Loading Gene Ontology...
Running Blast MFO
!!!Error!!! /usr/bin/blastpgp -i
/tmp/autopkgtest-lxc.0rcgyf45/downtmp/autopkgtest_tmp/metastudent3yybmcjr/fasta_splits/split_0.fasta
-o
/tmp/autopkgtest-lxc.0rcgyf45/downtmp/autopkgtest_tmp/metastudent3yybmcjr/fasta_splits/split_0.fasta.blast
-d /usr/share/metastudent-data/dataset_201401/MFO/goasp.fasta -e 1.0 -j 3 -b
1000 -v 1000
1>/tmp/autopkgtest-lxc.0rcgyf45/downtmp/autopkgtest_tmp/metastudent3yybmcjr/fasta_splits/split_0.fasta.blast.out
2>/tmp/autopkgtest-lxc.0rcgyf45/downtmp/autopkgtest_tmp/metastudent3yybmcjr/fasta_splits/split_0.fasta.blast.err
255
Deleting temp directories...
====== Metastudent finished ======
Traceback (most recent call last):
File "/usr/bin/metastudent", line 775, in <module>
runIt(tempfile, inputFastaFilePath, outputFilePath, outputBlast,
blastKickstartDatabasePaths,
File "/usr/bin/metastudent", line 202, in runIt
runBlast(fastaFilePathLocal, database, blastOutputFilePathLocal,
tmpDirPath, configMap["BLAST_EVAL_%s" % (
File "/usr/lib/python3/dist-packages/metastudentPkg/runMethods.py", line 46,
in runBlast
raise Exception
Exception
autopkgtest [21:23:09]: test run-unit-test: -----------------------]
Any idea what might be wrong here?
Kind regards
Andreas.
[1]
https://ci.debian.net/data/autopkgtest/testing/armhf/m/metastudent/10407805/log.gz
--
http://fam-tille.de
