Control: tags -1 help I agree with Ghislain that the issue below might be caused by Cython. Any idea how to fix this?
Kind regards Andreas. On Fri, Jun 29, 2018 at 12:23:52PM +0200, Ghislain Vaillant wrote: > I am away right now and can't investigate before two weeks. > > Looks Cython related from a first look. > > Ghis > > Le ven. 29 juin 2018 à 11:17, Andreas Tille <andr...@fam-tille.de> a écrit : > > > Hi Ghislain, > > > > since one of the Debian Med packages seems to be affected I tried to > > upgrade h5py (see Git repository). Unfortunately it does not build: > > > > ... > > running build_ext > > Traceback (most recent call last): > > File "setup.py", line 168, in <module> > > cmdclass = CMDCLASS, > > File "/usr/lib/python2.7/dist-packages/setuptools/__init__.py", line > > 129, in setup > > return distutils.core.setup(**attrs) > > File "/usr/lib/python2.7/distutils/core.py", line 151, in setup > > dist.run_commands() > > File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands > > self.run_command(cmd) > > File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command > > cmd_obj.run() > > File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run > > self.run_command(cmd_name) > > File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command > > self.distribution.run_command(command) > > File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command > > cmd_obj.run() > > File "/build/h5py-2.8.0/setup_build.py", line 156, in run > > from Cython.Build import cythonize > > File "/usr/lib/python2.7/dist-packages/Cython/Build/__init__.py", line > > 1, in <module> > > from .Dependencies import cythonize > > File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", > > line 36, in <module> > > from ..Compiler.Main import Context, CompilationOptions, > > default_options > > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py", line > > 30, in <module> > > from .Symtab import ModuleScope > > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Symtab.py", line > > 19, in <module> > > from . import PyrexTypes > > File "/usr/lib/python2.7/dist-packages/Cython/Compiler/PyrexTypes.py", > > line 17, in <module> > > from .Code import UtilityCode, LazyUtilityCode, TempitaUtilityCode > > File "Cython/Compiler/Code.py", line 38, in init Cython.Compiler.Code > > ImportError: /usr/lib/python2.7/dist-packages/Cython/ > > StringIOTree.x86_64-linux-gnu.so: undefined symbol: Py_InitModule4_64 > > E: pybuild pybuild:336: build: plugin distutils failed with: exit code=1: > > /usr/bin/python-dbg setup.py build > > dh_auto_build: pybuild --build -i python{version}-dbg -p 2.7 returned exit > > code 13 > > make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25 > > make[1]: Leaving directory '/build/h5py-2.8.0' > > make: *** [debian/rules:10: build] Error 2 > > dpkg-buildpackage: error: debian/rules build gave error exit status 2 > > > > > > Can you please have a look? > > > > Kind regards > > > > Andreas. > > > > -- > > http://fam-tille.de > > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de