Source: numcodecs Version: 0.13.0+ds-1 Severity: normal Tags: upstream User: [email protected] Usertags: python3.13 https://github.com/zarr-developers/numcodecs/issues/553
This package failed build from source when test-built against a version of python3-defaults that includes 3.13 as a supported version. To reproduce this issue, build against python3-defaults (python3-all-dev etc.) from Debian experimental. What's new in Python 3.13: https://docs.python.org/3.13/whatsnew/3.13.html Log snippet: numcodecs/tests/test_quantize.py ....... [ 83%] numcodecs/tests/test_registry.py ... [ 84%] numcodecs/tests/test_shuffle.py ........................................ [ 90%] .................... [ 93%] numcodecs/tests/test_vlen_array.py ....... [ 94%] numcodecs/tests/test_vlen_bytes.py ....... [ 96%] numcodecs/tests/test_vlen_utf8.py ........ [ 97%] numcodecs/tests/test_zlib.py ......... [ 98%] numcodecs/tests/test_zstd.py .......F [100%] =================================== FAILURES =================================== ____________________________ test_native_functions _____________________________ def test_native_functions(): # Note, these assertions might need to be changed for new versions of zstd > assert Zstd.default_level == 3 E assert default_level == 3 E + where default_level = Zstd.default_level numcodecs/tests/test_zstd.py:93: AssertionError =============================== warnings summary =============================== numcodecs/tests/test_entrypoints_backport.py:11 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build/numcodecs/tests/test_entrypoints_backport.py:11: DeprecationWarning: 'pkgutil.find_loader' is deprecated and slated for removal in Python 3.14; use importlib.util.find_spec() instead if not pkgutil.find_loader("importlib_metadata"): # pragma: no cover numcodecs/tests/test_blosc.py: 15 warnings numcodecs/tests/test_entrypoints_backport.py: 1 warning numcodecs/tests/test_shuffle.py: 5 warnings /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=243) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() numcodecs/tests/test_compat.py::test_ensure_contiguous_ndarray_invalid_inputs /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build/numcodecs/tests/test_compat.py:81: DeprecationWarning: The 'u' type code is deprecated and will be removed in Python 3.16 a = array.array('u', 'qwertyuiqwertyui') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -------- coverage: platform linux, python 3.13.0-candidate-2 --------- Coverage XML written to file coverage.xml =========================== short test summary info ============================ FAILED numcodecs/tests/test_zstd.py::test_native_functions - assert default_l... = 1 failed, 563 passed, 37 skipped, 26 deselected, 36 xfailed, 23 warnings in 29.51s = E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build; python3.13 -m pytest -k "not test_non_numpy_inputs and not test_non_numpy_inputs" --pyargs numcodecs I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build; python3.12 -m pytest -k "not test_non_numpy_inputs and not test_non_numpy_inputs" --pyargs numcodecs ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.2, pluggy-1.5.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build configfile: pyproject.toml plugins: typeguard-4.3.0, cov-5.0.0 collected 659 items / 26 deselected / 4 skipped / 633 selected numcodecs/astype.py . [ 0%] numcodecs/categorize.py . [ 0%] numcodecs/delta.py . [ 0%] numcodecs/fixedscaleoffset.py . [ 0%] numcodecs/json.py . [ 0%] numcodecs/msgpacks.py . [ 0%] numcodecs/packbits.py . [ 1%] numcodecs/pickles.py . [ 1%] numcodecs/quantize.py . [ 1%] numcodecs/registry.py . [ 1%] numcodecs/tests/test_astype.py ...... [ 2%] numcodecs/tests/test_base64.py ........ [ 3%] numcodecs/tests/test_bitround.py ............. [ 5%] numcodecs/tests/test_blosc.py .......................................... [ 12%] ........................................................................ [ 23%] ...sssssssssssss................................................s....... [ 35%] .....s...xxxxxxxxxsxxxxxxxxxxxxsxxxxxxxxxxxxsxxx.........s............s. [ 46%] ...........s............s............s............s............s........ [ 57%] ....s........................................s..ss [ 65%] numcodecs/tests/test_bz2.py ...... [ 66%] numcodecs/tests/test_categorize.py ...... [ 67%] numcodecs/tests/test_checksum32.py ...... [ 68%] numcodecs/tests/test_compat.py ....... [ 69%] numcodecs/tests/test_delta.py ...... [ 70%] numcodecs/tests/test_entrypoints.py . [ 70%] numcodecs/tests/test_entrypoints_backport.py . [ 71%] numcodecs/tests/test_fixedscaleoffset.py ...... [ 72%] numcodecs/tests/test_fletcher32.py ...... [ 72%] numcodecs/tests/test_gzip.py ........... [ 74%] numcodecs/tests/test_jenkins.py ....... [ 75%] numcodecs/tests/test_json.py .... [ 76%] numcodecs/tests/test_lz4.py ....... [ 77%] numcodecs/tests/test_lzma.py ........ [ 78%] numcodecs/tests/test_msgpacks.py ...... [ 79%] numcodecs/tests/test_ndarray_like.py .s..s..s..s [ 81%] numcodecs/tests/test_packbits.py .... [ 82%] numcodecs/tests/test_pickles.py .... [ 82%] numcodecs/tests/test_quantize.py ....... [ 83%] numcodecs/tests/test_registry.py ... [ 84%] numcodecs/tests/test_shuffle.py ........................................ [ 90%] .................... [ 93%] numcodecs/tests/test_vlen_array.py ....... [ 94%] numcodecs/tests/test_vlen_bytes.py ....... [ 96%] numcodecs/tests/test_vlen_utf8.py ........ [ 97%] numcodecs/tests/test_zlib.py ......... [ 98%] numcodecs/tests/test_zstd.py ........ [100%] =============================== warnings summary =============================== numcodecs/tests/test_entrypoints_backport.py:11 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/numcodecs/tests/test_entrypoints_backport.py:11: DeprecationWarning: 'pkgutil.find_loader' is deprecated and slated for removal in Python 3.14; use importlib.util.find_spec() instead if not pkgutil.find_loader("importlib_metadata"): # pragma: no cover numcodecs/tests/test_blosc.py: 15 warnings numcodecs/tests/test_entrypoints_backport.py: 1 warning numcodecs/tests/test_shuffle.py: 5 warnings /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=315) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.12.6-final-0 ----------- Coverage XML written to file coverage.xml === 564 passed, 37 skipped, 26 deselected, 36 xfailed, 22 warnings in 13.63s === I: pybuild pybuild:334: rm -rf /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/fixture /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/.coverage /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/coverage.xml dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 make: *** [debian/rules:15: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-09-13T09:18:53Z If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/709852/ This bug has been filed at "normal" severity, as we haven't started the transition to add 3.13 as a supported version, yet. This will be raised to RC as soon as that happens, hopefully well before trixie. Thanks, Stefano -- debian-science-maintainers mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
