Your message dated Sat, 14 Sep 2024 14:37:52 +0000
with message-id <[email protected]>
and subject line Bug#1081627: fixed in numcodecs 0.13.0+ds-2
has caused the Debian Bug report #1081627,
regarding FTBFS with Python 3.13
to be marked as done.
This means that you claim that the problem has been dealt with.
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1081627: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1081627
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: numcodecs
Version: 0.13.0+ds-1
Severity: normal
Tags: upstream
User: [email protected]
Usertags: python3.13
https://github.com/zarr-developers/numcodecs/issues/553
This package failed build from source when test-built against a version of
python3-defaults that includes 3.13 as a supported version.
To reproduce this issue, build against python3-defaults (python3-all-dev etc.)
from Debian experimental.
What's new in Python 3.13:
https://docs.python.org/3.13/whatsnew/3.13.html
Log snippet:
numcodecs/tests/test_quantize.py ....... [ 83%]
numcodecs/tests/test_registry.py ... [ 84%]
numcodecs/tests/test_shuffle.py ........................................ [ 90%]
.................... [ 93%]
numcodecs/tests/test_vlen_array.py ....... [ 94%]
numcodecs/tests/test_vlen_bytes.py ....... [ 96%]
numcodecs/tests/test_vlen_utf8.py ........ [ 97%]
numcodecs/tests/test_zlib.py ......... [ 98%]
numcodecs/tests/test_zstd.py .......F [100%]
=================================== FAILURES ===================================
____________________________ test_native_functions _____________________________
def test_native_functions():
# Note, these assertions might need to be changed for new versions of
zstd
> assert Zstd.default_level == 3
E assert default_level == 3
E + where default_level = Zstd.default_level
numcodecs/tests/test_zstd.py:93: AssertionError
=============================== warnings summary ===============================
numcodecs/tests/test_entrypoints_backport.py:11
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build/numcodecs/tests/test_entrypoints_backport.py:11:
DeprecationWarning: 'pkgutil.find_loader' is deprecated and slated for removal
in Python 3.14; use importlib.util.find_spec() instead
if not pkgutil.find_loader("importlib_metadata"): # pragma: no cover
numcodecs/tests/test_blosc.py: 15 warnings
numcodecs/tests/test_entrypoints_backport.py: 1 warning
numcodecs/tests/test_shuffle.py: 5 warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning:
This process (pid=243) is multi-threaded, use of fork() may lead to deadlocks
in the child.
self.pid = os.fork()
numcodecs/tests/test_compat.py::test_ensure_contiguous_ndarray_invalid_inputs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build/numcodecs/tests/test_compat.py:81:
DeprecationWarning: The 'u' type code is deprecated and will be removed in
Python 3.16
a = array.array('u', 'qwertyuiqwertyui')
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
-------- coverage: platform linux, python 3.13.0-candidate-2 ---------
Coverage XML written to file coverage.xml
=========================== short test summary info ============================
FAILED numcodecs/tests/test_zstd.py::test_native_functions - assert default_l...
= 1 failed, 563 passed, 37 skipped, 26 deselected, 36 xfailed, 23 warnings in
29.51s =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_numcodecs/build; python3.13 -m pytest
-k "not test_non_numpy_inputs and not test_non_numpy_inputs" --pyargs numcodecs
I: pybuild base:311: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build; python3.12 -m pytest
-k "not test_non_numpy_inputs and not test_non_numpy_inputs" --pyargs numcodecs
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.2, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build
configfile: pyproject.toml
plugins: typeguard-4.3.0, cov-5.0.0
collected 659 items / 26 deselected / 4 skipped / 633 selected
numcodecs/astype.py . [ 0%]
numcodecs/categorize.py . [ 0%]
numcodecs/delta.py . [ 0%]
numcodecs/fixedscaleoffset.py . [ 0%]
numcodecs/json.py . [ 0%]
numcodecs/msgpacks.py . [ 0%]
numcodecs/packbits.py . [ 1%]
numcodecs/pickles.py . [ 1%]
numcodecs/quantize.py . [ 1%]
numcodecs/registry.py . [ 1%]
numcodecs/tests/test_astype.py ...... [ 2%]
numcodecs/tests/test_base64.py ........ [ 3%]
numcodecs/tests/test_bitround.py ............. [ 5%]
numcodecs/tests/test_blosc.py .......................................... [ 12%]
........................................................................ [ 23%]
...sssssssssssss................................................s....... [ 35%]
.....s...xxxxxxxxxsxxxxxxxxxxxxsxxxxxxxxxxxxsxxx.........s............s. [ 46%]
...........s............s............s............s............s........ [ 57%]
....s........................................s..ss [ 65%]
numcodecs/tests/test_bz2.py ...... [ 66%]
numcodecs/tests/test_categorize.py ...... [ 67%]
numcodecs/tests/test_checksum32.py ...... [ 68%]
numcodecs/tests/test_compat.py ....... [ 69%]
numcodecs/tests/test_delta.py ...... [ 70%]
numcodecs/tests/test_entrypoints.py . [ 70%]
numcodecs/tests/test_entrypoints_backport.py . [ 71%]
numcodecs/tests/test_fixedscaleoffset.py ...... [ 72%]
numcodecs/tests/test_fletcher32.py ...... [ 72%]
numcodecs/tests/test_gzip.py ........... [ 74%]
numcodecs/tests/test_jenkins.py ....... [ 75%]
numcodecs/tests/test_json.py .... [ 76%]
numcodecs/tests/test_lz4.py ....... [ 77%]
numcodecs/tests/test_lzma.py ........ [ 78%]
numcodecs/tests/test_msgpacks.py ...... [ 79%]
numcodecs/tests/test_ndarray_like.py .s..s..s..s [ 81%]
numcodecs/tests/test_packbits.py .... [ 82%]
numcodecs/tests/test_pickles.py .... [ 82%]
numcodecs/tests/test_quantize.py ....... [ 83%]
numcodecs/tests/test_registry.py ... [ 84%]
numcodecs/tests/test_shuffle.py ........................................ [ 90%]
.................... [ 93%]
numcodecs/tests/test_vlen_array.py ....... [ 94%]
numcodecs/tests/test_vlen_bytes.py ....... [ 96%]
numcodecs/tests/test_vlen_utf8.py ........ [ 97%]
numcodecs/tests/test_zlib.py ......... [ 98%]
numcodecs/tests/test_zstd.py ........ [100%]
=============================== warnings summary ===============================
numcodecs/tests/test_entrypoints_backport.py:11
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/numcodecs/tests/test_entrypoints_backport.py:11:
DeprecationWarning: 'pkgutil.find_loader' is deprecated and slated for removal
in Python 3.14; use importlib.util.find_spec() instead
if not pkgutil.find_loader("importlib_metadata"): # pragma: no cover
numcodecs/tests/test_blosc.py: 15 warnings
numcodecs/tests/test_entrypoints_backport.py: 1 warning
numcodecs/tests/test_shuffle.py: 5 warnings
/usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning:
This process (pid=315) is multi-threaded, use of fork() may lead to deadlocks
in the child.
self.pid = os.fork()
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.12.6-final-0 -----------
Coverage XML written to file coverage.xml
=== 564 passed, 37 skipped, 26 deselected, 36 xfailed, 22 warnings in 13.63s ===
I: pybuild pybuild:334: rm -rf
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/fixture
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/.coverage
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_numcodecs/build/coverage.xml
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13
3.12" returned exit code 13
make: *** [debian/rules:15: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit
status 2
--------------------------------------------------------------------------------
Build finished at 2024-09-13T09:18:53Z
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/709852/
This bug has been filed at "normal" severity, as we haven't started the
transition to add 3.13 as a supported version, yet. This will be raised to RC
as soon as that happens, hopefully well before trixie.
Thanks,
Stefano
--- End Message ---
--- Begin Message ---
Source: numcodecs
Source-Version: 0.13.0+ds-2
Done: Antonio Valentino <[email protected]>
We believe that the bug you reported is fixed in the latest version of
numcodecs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Antonio Valentino <[email protected]> (supplier of updated numcodecs
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 14 Sep 2024 13:58:08 +0000
Source: numcodecs
Architecture: source
Version: 0.13.0+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Antonio Valentino <[email protected]>
Closes: 1081627
Changes:
numcodecs (0.13.0+ds-2) unstable; urgency=medium
.
* Standards version bumped to 4.7.0, no changes.
* debian/rules:
- Temporary skip test_native_functions (depends on the zstd version).
Closes: #1081627.
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