Thanks for your help. I can build the package on buster and bullyseye. Which distribution do you use? I find the version of softwares like python is quite new. > 1. I am under the impression that the Python package should be named > 'ete3', not 'ete'. After installing the .deb package Python command > 'import ete3' fails. The upstream uses `ete` as the name of repository but they call the Python package `ete3`. In their paper, they explain the number 3 is the version and in their roadmap they plan to release `ete4`. (https://github.com/etetoolkit/ete/wiki/ROADMAP). I think using a version independent name like `ete` for source package and `python3-ete` for library is convenient. How to do think about it?
The import error has been fixed. 2-5 has been fixed now. > 6. Please consider maintaining this package under the umbrella of Debian > Python or Science teams. To do so, join the appropriate team, move the > packaging repository to their namespace, and adjust Maintainer and > Uploaders fields in debian/control. I have created a directory in https://salsa.debian.org/science-team/ete3 but I do not have privileges to create a branch. Can you help on it? Yours zhaofeng-shu33 On Fri, Jul 3, 2020 at 1:17 PM <[email protected]> wrote: > > Hello, > > On 2020-07-02 17:23, zhao feng wrote: > > ok, the warning has been fixed by 3.1.1-3 > > Thanks for fixing lintian issues. I have cloned your repository, tried > to build it, and ran into the following problem: > > dh_auto_test -O--buildsystem=pybuild > pybuild --test -i python{version} -p 3.8 > I: pybuild base:217: cd > /home/andrius/debian-packages/ete/.pybuild/cpython3_3.8_ete/build; > python3.8 -m pytest -k "not test_ncbiquery and not test_skbio and not > test_ncbi_compare and not test_get_topology and not > test_01tree_annotation and not test_00_update_database" > ete3/test/test_api.py > ============================= test session starts > ============================== > platform linux -- Python 3.8.4rc1, pytest-4.6.11, py-1.8.1, pluggy-0.13.0 > rootdir: /home/andrius/debian-packages/ete > plugins: timeout-1.3.3, cov-2.8.1 > collected 51 items / 6 deselected / 45 selected > > ete3/test/test_api.py ............................................Aborted > E: pybuild pybuild:352: test: plugin distutils failed with: exit > code=134: cd > /home/andrius/debian-packages/ete/.pybuild/cpython3_3.8_ete/build; > python3.8 -m pytest -k "not test_ncbiquery and not test_skbio and not > test_ncbi_compare and not test_get_topology and not > test_01tree_annotation and not test_00_update_database" > ete3/test/test_api.py > dh_auto_test: error: pybuild --test -i python{version} -p 3.8 returned > exit code 13 > make: *** [debian/rules:9: build] Error 25 > dpkg-buildpackage: error: debian/rules build subprocess returned exit > status 2 > debuild: fatal error at line 1182: > dpkg-buildpackage -us -uc -ui -i -I failed > gbp:error: 'debuild -i -I -uc -us' failed: it exited with 29 > > Do you know what might be the reason? > > A few more issues to address to address: > > 1. I am under the impression that the Python package should be named > 'ete3', not 'ete'. After installing the .deb package Python command > 'import ete3' fails. > > 2. Directory 'SQLite-Levenshtein' (SQLite extension for Levenshtein > algorithm) should not be present in the .deb package, at least not in > its current form. However, it could be packaged separately in the future. > > 3. If 'SQLite-Levenshtein' remains in the source, it should be mentioned > in debian/copyright. > > 4. The copyright for ETE is GPL-3+. > > 5. Please consider licensing debian/ directory under the same license > too to avoid possible license incompatibilities. > > 6. Please consider maintaining this package under the umbrella of Debian > Python or Science teams. To do so, join the appropriate team, move the > packaging repository to their namespace, and adjust Maintainer and > Uploaders fields in debian/control. > > Thanks for your efforts to package ete. > > Best wishes, > Andrius >
