Thanks for reporting this. I fixed this.
(my compilation tests would have picked that up otherwise) > using /work/01301/mmacmane/sebhtml-ray-v1.6.1-61-gaf7557e.tar.gz, pulled from > git this AM.. Seems to be related to LIBBZ2=y, removing this requirement > eliminates the error. (login3$ which bzip2 --> /usr/bin/bzip2) > > make PREFIX=/work/01301/mmacmane/ray.new/build MAXKMERLENGTH=64 HAVE_LIBBZ2=y > MPICXX=/work/01301/mmacmane/yye00/openmpi-1.4.2_install/bin/mpicxx > > Compilation options (you can change them of course) > > PREFIX = /work/01301/mmacmane/ray.new/build > MAXKMERLENGTH = 64 > FORCE_PACKING = n > ASSERT = n > HAVE_LIBZ = n > HAVE_LIBBZ2 = y > HAVE_CLOCK_GETTIME = n > INTEL_COMPILER = n > VIRTUAL_SEQUENCER = n > MPICXX = /work/01301/mmacmane/yye00/openmpi-1.4.2_install/bin/mpicxx > GPROF = n > OPTIMIZE = y > DEBUG = n > > Compilation and linking flags (generated automatically) > > CXXFLAGS = -Icode -Wall -std=c++98 -D MAXKMERLENGTH=64 -O3 -DHAVE_LIBBZ2 > LDFLAGS = -lbz2 > > MPICXX code/memory/ReusableMemoryStore.cpp > MPICXX code/memory/MyAllocator.cpp > MPICXX code/memory/RingAllocator.cpp > MPICXX code/memory/malloc_types.cpp > MPICXX code/memory/allocator.cpp > MPICXX code/memory/DefragmentationGroup.cpp > MPICXX code/memory/ChunkAllocatorWithDefragmentation.cpp > MPICXX code/memory/DefragmentationLane.cpp > MPICXX code/communication/mpi_tags.cpp > MPICXX code/communication/VirtualCommunicator.cpp > MPICXX code/communication/BufferedData.cpp > MPICXX code/communication/Message.cpp > MPICXX code/communication/MessageProcessor.cpp > In file included from code/assembler/Loader.h:38, > from code/assembler/SequencesLoader.h:27, > from code/communication/MessageProcessor.h:36, > from code/communication/MessageProcessor.cpp:27: > code/format/FastqBz2Loader.h:30:36: error: memory/OnDiskAllocator.h: No such > file or directory > make: *** [code/communication/MessageProcessor.o] Error 1 > ____________________________________________ > Matthew MacManes > University of California- Berkeley > Museum of Vertebrate Zoology > Phone: 510-495-5833 > Lab Website: http://ib.berkeley.edu/labs/lacey > Personal Website: http://macmanes.com/ > Sébastien Boisvert http://github.com/sebhtml/ray Sébastien ________________________________________ De : Matthew MacManes [macma...@gmail.com] Date d'envoi : 22 juillet 2011 13:36 À : Ray Mailing List Objet : [Denovoassembler-users] make error with latest version using /work/01301/mmacmane/sebhtml-ray-v1.6.1-61-gaf7557e.tar.gz, pulled from git this AM.. Seems to be related to LIBBZ2=y, removing this requirement eliminates the error. (login3$ which bzip2 --> /usr/bin/bzip2) make PREFIX=/work/01301/mmacmane/ray.new/build MAXKMERLENGTH=64 HAVE_LIBBZ2=y MPICXX=/work/01301/mmacmane/yye00/openmpi-1.4.2_install/bin/mpicxx Compilation options (you can change them of course) PREFIX = /work/01301/mmacmane/ray.new/build MAXKMERLENGTH = 64 FORCE_PACKING = n ASSERT = n HAVE_LIBZ = n HAVE_LIBBZ2 = y HAVE_CLOCK_GETTIME = n INTEL_COMPILER = n VIRTUAL_SEQUENCER = n MPICXX = /work/01301/mmacmane/yye00/openmpi-1.4.2_install/bin/mpicxx GPROF = n OPTIMIZE = y DEBUG = n Compilation and linking flags (generated automatically) CXXFLAGS = -Icode -Wall -std=c++98 -D MAXKMERLENGTH=64 -O3 -DHAVE_LIBBZ2 LDFLAGS = -lbz2 MPICXX code/memory/ReusableMemoryStore.cpp MPICXX code/memory/MyAllocator.cpp MPICXX code/memory/RingAllocator.cpp MPICXX code/memory/malloc_types.cpp MPICXX code/memory/allocator.cpp MPICXX code/memory/DefragmentationGroup.cpp MPICXX code/memory/ChunkAllocatorWithDefragmentation.cpp MPICXX code/memory/DefragmentationLane.cpp MPICXX code/communication/mpi_tags.cpp MPICXX code/communication/VirtualCommunicator.cpp MPICXX code/communication/BufferedData.cpp MPICXX code/communication/Message.cpp MPICXX code/communication/MessageProcessor.cpp In file included from code/assembler/Loader.h:38, from code/assembler/SequencesLoader.h:27, from code/communication/MessageProcessor.h:36, from code/communication/MessageProcessor.cpp:27: code/format/FastqBz2Loader.h:30:36: error: memory/OnDiskAllocator.h: No such file or directory make: *** [code/communication/MessageProcessor.o] Error 1 ____________________________________________ Matthew MacManes University of California- Berkeley Museum of Vertebrate Zoology Phone: 510-495-5833 Lab Website: http://ib.berkeley.edu/labs/lacey Personal Website: http://macmanes.com/ ------------------------------------------------------------------------------ Storage Efficiency Calculator This modeling tool is based on patent-pending intellectual property that has been used successfully in hundreds of IBM storage optimization engage- ments, worldwide. Store less, Store more with what you own, Move data to the right place. Try It Now! http://www.accelacomm.com/jaw/sfnl/114/51427378/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users