Hi,

I'm using openmpi-1.4.3. It should be universal. What may be the problem?

Thanks!

CJ

2011/9/6 Sébastien Boisvert <sebastien.boisver...@ulaval.ca>:
> Hello,
>
> The compilation warning in VirtualCommunicator.cpp are already fixed in the 
> git repository.
>
>
> The compilation errors are within your mpi.h.
>
>
>> /usr/local/include/mpi.h:439: error: expected initializer before ‘__ARGS’
>
>
> Which implementation of the message-passing interface are you using ?
>
>
>
>
>                              Sébastien
>
>             http://github.com/sebhtml/ray
>
>> ________________________________________
>> De : CJ [cjfu1...@gmail.com]
>> Date d'envoi : 6 septembre 2011 12:29
>> À : denovoassembler-users@lists.sourceforge.net
>> Objet : [Denovoassembler-users] Problem to compile on a Mac
>>
>> Hi,
>>
>> I tried to compile Ray1.6.1 on a Mac 10.6 and had the following error
>> message. How can I solve the problem?  Many thanks!
>>
>> ----------
>>
>> Compilation and linking flags (generated automatically)
>>
>> CXXFLAGS = -Icode -D MAXKMERLENGTH=32 -O3
>> LDFLAGS =
>>
>> MPICXX code/memory/OnDiskAllocator.cpp
>> MPICXX code/memory/ReusableMemoryStore.cpp
>> MPICXX code/memory/MyAllocator.cpp
>> MPICXX code/memory/RingAllocator.cpp
>> MPICXX code/memory/malloc_types.cpp
>> MPICXX code/memory/allocator.cpp
>> MPICXX code/memory/DefragmentationGroup.cpp
>> MPICXX code/memory/ChunkAllocatorWithDefragmentation.cpp
>> MPICXX code/memory/DefragmentationLane.cpp
>> MPICXX code/communication/mpi_tags.cpp
>> MPICXX code/communication/VirtualCommunicator.cpp
>> code/communication/VirtualCommunicator.cpp: In member function ‘void
>> VirtualCommunicator::printStatistics()’:
>> code/communication/VirtualCommunicator.cpp:342: warning: format ‘%lu’
>> expects type ‘long unsigned int’, but argument 3 has type ‘uint64_t’
>> code/communication/VirtualCommunicator.cpp:342: warning: format ‘%lu’
>> expects type ‘long unsigned int’, but argument 4 has type ‘uint64_t’
>> MPICXX code/communication/BufferedData.cpp
>> MPICXX code/communication/Message.cpp
>> MPICXX code/communication/MessageProcessor.cpp
>> MPICXX code/communication/MessagesHandler.cpp
>> In file included from code/communication/MessagesHandler.h:25,
>> from code/communication/MessagesHandler.cpp:23:
>> /usr/local/include/mpi.h:439: error: expected initializer before ‘__ARGS’
>> /usr/local/include/mpi.h:441: error: expected initializer before ‘__ARGS’
>> ............
>> /usr/local/include/mpi.h:1095: error: expected initializer before ‘__ARGS’
>> /usr/local/include/mpi.h:1096: error: expected initializer before ‘__ARGS’
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::sendMessages(StaticVector*, int)’:
>> code/communication/MessagesHandler.cpp:58: error: ‘MPI_Isend’ was not
>> declared in this scope
>> code/communication/MessagesHandler.cpp:59: error: ‘MPI_Request_free’
>> was not declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::receiveMessages(StaticVector*, RingAllocator*, int)’:
>> code/communication/MessagesHandler.cpp:102: error: ‘MPI_Test’ was not
>> declared in this scope
>> code/communication/MessagesHandler.cpp:111: error: ‘MPI_Get_count’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp:120: error: ‘MPI_Start’ was not
>> declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::initialiseMembers()’:
>> code/communication/MessagesHandler.cpp:158: error: ‘MPI_Recv_init’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp:159: error: ‘MPI_Start’ was not
>> declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::freeLeftovers()’:
>> code/communication/MessagesHandler.cpp:165: error: ‘MPI_Cancel’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp:166: error: ‘MPI_Request_free’
>> was not declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::constructor(int*, char***)’:
>> code/communication/MessagesHandler.cpp:180: error: ‘MPI_Init’ was not
>> declared in this scope
>> code/communication/MessagesHandler.cpp:184: error:
>> ‘MPI_Get_processor_name’ was not declared in this scope
>> code/communication/MessagesHandler.cpp:185: error: ‘MPI_Comm_rank’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp:186: error: ‘MPI_Comm_size’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::destructor()’:
>> code/communication/MessagesHandler.cpp:200: error: ‘MPI_Finalize’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::barrier()’:
>> code/communication/MessagesHandler.cpp:216: error: ‘MPI_Barrier’ was
>> not declared in this scope
>> code/communication/MessagesHandler.cpp: In member function ‘void
>> MessagesHandler::version(int*, int*)’:
>> code/communication/MessagesHandler.cpp:220: error: ‘MPI_Get_version’
>> was not declared in this scope
>> make: *** [code/communication/MessagesHandler.o] Error 1
>>
>>
>> ----------
>> CJ
>>
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