I don't know what is causing this behavior. Is your bacteria population heterogeneous ?
Do you expect a lot of polymorphic sites at the population level ? On Tue, 2012-03-06 at 10:44 -0500, Egon Ozer wrote: > Sorry to keep harping on this, but maybe I found an example of what I > emailed you about last night, where 1 read sets the consensus over 40 > contradicting reads. Do you think adjusting my kmer settings up or > down might minimize this? At this point I'm not looking for long > contigs, just the ability to make accurate SNP calls. > > Thanks, > - Egon > > > ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users