Hello, On Sat, 2012-04-07 at 05:58 -0400, Naseer Sangwan wrote: > Dear Sir, > > I am a Ph.D candidate at university of Delhi, INDIA. I want to ask a > query about ray.
ok. > can i use RAY to estimate average genome size in > metagenome pair end library . can you suggest any thing. > Hardly. This is a difficult task. Some papers classify k-mers using their coverage before assembly (meta-velvet and meta-ibda), but this will likely lead to misassembly. I think most of the tools presently can only generate contigs. To estimate the number of species from these is hard so I guess that estimating their genome sizes is harder. Does than answer your question at all ? > > Naseer ------------------------------------------------------------------------------ Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app monitoring today. Free. http://p.sf.net/sfu/Boundary-dev2dev _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
