Le 2012-05-21 13:07, nikos ioannidis a écrit :
> Hello,
>
>
>
> i want to ask you again about the coverage,
> if i set the minimun coverage after a first run with a given Kmer,
> can this improve the assembly process?

Not really. In fact, you should not be changing these. In the Ray 2.0.0 
series (v2.0.0-rc7 is latest),
these parameters are not used at all.

> Also what is the repeat coverage?
How can i handle the coverage(minimum, peak,repeat) parameters?
>

You should not be changing them. Anyway, they will be removed because they
are not used anymore in the 2.0.0 series.

> Thank you.


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