Hello
I see that many studies at ENA have 454 GS FLX Titanium paired reads,
but most of the times the files are fastq1 fastq2 and fastq3
how should i compine these files as an input in Ray?
Like: -p fastq1 fastq2
-p fastq2 fastq3
something like that could work?
For example at this study : http://www.ebi.ac.uk/ena/data/view/SRP012081
they have:
Instrument Model Library Layout Run Read Count Run Base Count
Illumina HiSeq 2000 PAIRED 12,794,66
42Gb Fastq file#1
Illumina HiSeq 2000 PAIRED 12,794,66
42Gb Fastq file#2
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#1 <-
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#2 <-
454 GS FLX Titanium PAIRED 66,691
31Mb Fastq file#3 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#1 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#2 <-
454 GS FLX Titanium PAIRED 92,871
39Mb Fastq file#3 <-_
how should I set Ray for them?
Also how can I understand if a library is shortjumpimg or longjumping?
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