I guess I don't get it :-) I had set the option: -read-write-checkpoints
The job died, so I restarted it with the exact same parameters (simple since it's in a .sh script) It crashed and got in the logs: Error, combined_23/ already exists, change the -o parameter to another value. What setting do I give ray to resume thye assembly from checkpoints? Louis On 12-06-12 02:47 PM, Sébastien Boisvert wrote: > Yes, it does that. > > There will be binary files with the ".ray" extension in the > directory where you launched Ray. > > > You can not change the k-mer length when starting from old checkpoints. > > The command needs to have the same number of arguments in the same order. > > > On what kind of dataset are you exceeding time limits ? > > > Louis Letourneau a écrit : >> I saw these options on Ray >> Checkpointing >> -write-checkpoints >> Write checkpoint files >> -read-checkpoints >> Read checkpoint files >> -read-write-checkpoints >> Read and write checkpoint files >> >> >> >> I'm hitting walltimes on the cluster I'm using and I'm wondering if by >> setting: >> -read-write-checkpoints >> >> I can resume where Ray got killed because of walltime? >> >> If that's the purpose, what a great feature! :-) >> >> Louis >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> Denovoassembler-users mailing list >> Denovoassembler-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > Denovoassembler-users mailing list > Denovoassembler-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
