Hi, For bacterial genomes, somewhere between 16 and 32 processor cores is usually fine.
For metagenomes, it depends on their complexity. I process gut microbiomes with usually 64 cores for 200 000 000 reads in less than 6 hours. But as I said, your mileage can vary with other factors. It also depends on how much memory you have for each processor core. nikos ioannidis a écrit : > Hello, > > i want to ask you if you have to suggest, > according to size of the sample that is going > to be assembled, an approximate amount of maximum > CPUs that should be used in order not to lose time > sending messages from one rank to another. > > Thank you. > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > Denovoassembler-users mailing list > Denovoassembler-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
