Hello, On 10/29/2012 04:02 PM, Christina Boucher wrote: > Hi, > > I am trying to use your Ray assembler. I've been using Spades (mainly > because I am formerly >from Pavel Pevzner's lab) but running out of memory on a large dataset.
Maybe processing your large dataset is more amenable with a distributed assembler. > The tar file posted >on the source forge is corrupted. Which file is corrupted in your case ? This one works quite fine for me: http://downloads.sourceforge.net/project/denovoassembler/Ray-v2.1.0.tar.bz2 And all previous releases were fine too. > Can you send me the latest version. > Sure, The latest version is http://downloads.sourceforge.net/project/denovoassembler/Ray-v2.1.0.tar.bz2 To get it and install it: $ wget http://downloads.sourceforge.net/project/denovoassembler/Ray-v2.1.0.tar.bz2 $ sha1sum Ray-v2.1.0.tar.bz2 4c09f2731445852857af53b65aa47e444792eeb0 Ray-v2.1.0.tar.bz2 $ tar xjf Ray-v2.1.0.tar.bz2 $ cd Ray-v2.1.0/ $ make $ mpiexec -n 1 ./Ray -version $ mpiexec -n 999 ./Ray -k 31 -p 1.left.fastq 1.right.fastq -p 2.left.fastq 2.right.fastq -o Test > Best, > Christina > > * > ------------------------------------------------* > *Christina Boucher* > **Department of Computer Science > Colorado State University > Fort Collins, CO 80523 > +1.970.491.8063 > cbouc...@cs.colostate.edu <mailto:cbouc...@cs.colostate.edu> > www.christinaboucher.com <http://www.christinaboucher.com> > *------------------------------------------------* > ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
