On 20/11/13 12:49 AM, madhu bioinfo wrote: > hello sebastin, Hi,
Please use the mailing list. > Am having illumina paired data of bacteria i would like to do the ray > assembly and i have tried the assembly with default parameters but it dint > give me > the expected results What was the expected result in your case ? > for my assembly what parameters can i use? my command was > mpiexec -hostfile hostfile1 /share/apps/Ray-v2.2.0/Ray -k 21 -p > file1.left.fastq file2.right.fastq -o rayout should i need to add any other > parameter >in the command line? waiting to hear from you soon You can increase the k-mer value to 31, that usually help. Can you post the content of LibraryStatistics.txt ? > */ > /* > */Madhu Chandrababunaidu/* > */Research Scholar at computational Biology and Genomics Lab,/* > */CSIR - Indian Institute of Chemical biology,/* > */kolkata-32/* > ------------------------------------------------------------------------------ Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
