On 02/11/2013 08:36 PM, Delbert Boncan wrote:
> Greetings!
>
> Dear Sir Boisvert:
>
> I am Delbert Boncan of the Marine Science Institute at the University of the
> Philippines in Diliman. I am currently working on a metagenomics project and
> has partially generated
> sequences for it using 454 GS Junior. I came across a paper in press about
> "Ray-Meta" for assembling metagenomes. I am wondering if it is already
> available and can be downloaded.
Yes. The Ray Meta solution is included in the Ray software package available at
http://denovoassembler.sourceforge.net/
>I've tried several assemblers for metagenomes and so far the one that worked
>for the raw data is Meta-Velvet.
There are also: Meta-IDBA, Genovo, and Ray Meta.
But for 454 GS Junior data, you may want to try also a overlap-layout-consensus
assembler like wgs-assembler.
http://sourceforge.net/apps/mediawiki/wgs-assembler/index.php?title=Main_Page
> I attempted to access the page where Ray-Meta can be downloaded
>by unfortunately the page is not available or has expired.
From http://denovoassembler.sourceforge.net/download.html
you can get a super-stable release from
http://sourceforge.net/projects/denovoassembler/files/
or you can use the stable rolling release from git repositories:
https://github.com/sebhtml/ray
https://github.com/sebhtml/RayPlatform
> I wondering if I could ask for an assistance from you for which I can obtain
> a copy of the assembler.
It's all open source and available freely over the Internet. The license is the
GNU General Public License version 3.
>I am very sorry for the informality of the request. Please be assured that
>proper citation of the assembler will be made.
>
> Thank you very much.
Please use the mailing list if you have questions or need assistance.
Sébastien
>
> Sincerely,
>
> Delbert
>
>
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