On 02/12/2013 05:15 AM, frederic texier wrote: > Bonjour de nouveau, > > J'ai un problème quand je veux installer avec l'otpion HAVE_LIBZ=y. > Faut-il un module supplémentaire à installer avant? >
Yes, you need zlib headers. On Debian or Ubuntu or other Debian-derived distributions: sudo apt-get install -y zlib1g-dev On Fedora or CentOS or other similar distribution: sudo yum install -y zlib-devel There is also the option HAVE_LIBBZ2=y that provides native support for fastq.bz2 files. > Je vous remercie. > Cordialement > Frédéric Texier. > > -----Message d'origine----- > De : Sébastien Boisvert [mailto:[email protected]] > Envoyé : vendredi 8 février 2013 18:05 > À : frederic texier > Cc : [email protected] > Objet : Re: Ray output > > Bonjour Frédéric, > > There is a work-in-progress to add this feature [1], although it's not in > the current backlog [2]. > > Current available courses of action are: > > 1. use -amos option to generate a AMOS file with Ray and then parse this to > obtain the information you want (used reads, and so on). > > 2. Map your reads on contigs (or on scaffolds) with a aligner and then pipe > this in a existing tool (I am sure there exists tools for that that take a > SAM file as input). > > > Also, if you want to visualize your assemblies to do some quality controls > (usually production departments like to do quality controls), you can use > Ray Cloud Browser. > > > Demo: http://genome.ulaval.ca/corbeillab/Ray-Cloud-Browser/ > Source code: https://github.com/sebhtml/Ray-Cloud-Browser > Deployment instructions: > https://raw.github.com/sebhtml/Ray-Cloud-Browser/master/Documentation/Deploy > ment.txt > > > --- > [1] https://github.com/sebhtml/ray/issues/65 > [2] https://github.com/sebhtml/ray/issues?milestone=5&state=open > > > > > Sébastien Boisvert > Community Manager, Ray Genomics Software Suite PhD student, Université Laval > > On 02/08/2013 09:05 AM, frederic texier wrote: >> Hello, >> >> I have used Ray to assemble bacterial genome but I don't know where find > the number of reads really used and the numer of reads not used in the > output. >> >> could you help me to find this, please? >> >> Thank you. >> -- >> >> Frédéric Texier >> >> Téléphone: +33(0)359317403 >> E-mail: [email protected] >> >> Genoscreen >> Campus Pasteur - 1 rue du Pr Calmette >> 59000 Lille >> Téléphone: +33(0)320877153 >> >> ********************************************************************** >> ****** Ce message et toutes les pièces jointes sont confidentiels et >> établis à l'intention exclusive de son ou ses destinataires. Si vous >> avez reçu ce message par erreur, merci d'en avertir immédiatement >> l'émetteur et de détruire le message ainsi que les pièces jointes. >> Toute modification, édition, utilisation ou diffusion non autorisée >> est interdite. L'émetteur décline toute responsabilité au titre de ce >> message s'il a été modifié, déformé, falsifié, infecté par un virus ou >> encore édité ou diffusé sans autorisation. >> >> This message and any attachments are confidential and intended for the >> named >> addressee(s) only. >> If you have received this message in error, please notify immediately >> the sender, then delete the message and the attachments. Any >> unauthorized modification, edition, use or dissemination is >> prohibited. The sender does not be liable for this message if it has >> been modified, altered, falsified, infected by a virus or even edited or > disseminated without authorization. >> ********************************************************************** >> ****** > ------------------------------------------------------------------------------ Free Next-Gen Firewall Hardware Offer Buy your Sophos next-gen firewall before the end March 2013 and get the hardware for free! Learn more. http://p.sf.net/sfu/sophos-d2d-feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
