On 19/03/13 06:15 PM, Dr.Gaurav Sablok wrote: > Dear Sébastien Boisvert, > > First of all congratulation for developing the Ray Assembler. > I wish to use this for assembling my chloroplast read data. I would like to > ask you that I have two illumina libraries for the chloroplast reads with > different insert size. > Both of them are 100 bp PE reads. so i wish to ask that can i combine these > reads and then can feed into Ray or I can feed the reads independently.
Sure. mpiexec -n 16 -k 51 -o test-1 -p lib_1_R1.fastq.gz lib_1_R2.fastq.gz -p lib_2_R1.fastq.gz lib_2_R2.fastq.gz > Please kindly help me with your opinion. I hope you will consider my request > for help and support me. Thanks a lot and your cooperation will be properly > cited. > > Furthemore, I am trying to install Ray but it is giving me same error every > time. Please kindly tell me your opinion on this. I have open MPI installed. > If you are using the development version, you need to run these commands: git clone git://github.com/sebhtml/ray.git git clone git://github.com/sebhtml/RayPlatform.git cd ray make > Best regards, > Gaurav > > ngsanalysis@ngsanalysis-h8-1502el:~/Desktop/ray-master$ make PREFIX=ray-build > Compilation options (you can change them of course) > PREFIX = ray-build > MPICXX = mpicxx > MAXKMERLENGTH = 32 > FORCE_PACKING = n > ASSERT = n > HAVE_LIBZ = n > HAVE_LIBBZ2 = n > Compilation and linking flags (generated automatically) > CXXFLAGS = -O3 -std=c++98 -Wall -g > CONFIG_FLAGS = -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_RAY_VERSION="2.2.0-rc0" > LDFLAGS = > make: *** RayPlatform: No such file or directory. Stop. > make: *** [RayPlatform/libRayPlatform.a] Error 2 > > Best regards, > Dr. Gaurav Sablok, > Research and Innovation Centre, > Fondazione Edmund Mach, > Via E. Mach 1, 38010 S. Michele all'Adige (TN), Italy > Cell: 0039-3270484-732 > Email:sabl...@gmail.com <mailto:email%3asabl...@gmail.com> > skype:dr.gauravsablok ------------------------------------------------------------------------------ Own the Future-Intel® Level Up Game Demo Contest 2013 Rise to greatness in Intel's independent game demo contest. Compete for recognition, cash, and the chance to get your game on Steam. $5K grand prize plus 10 genre and skill prizes. Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
