Hello, Has anyone assessed the impact of trimming/filtering reads on assembly outcome and performance? I would expect very high quality reads to use less memory and complete assembly a little faster perhaps, but will it make any impact on the final assembly?
We have run some control with no filtering and the results look great. However, some recent samples with low read counts and poor qualities produce no contigs at all. The only thing I can think to do initially is quality filter and try again. If anyone has compared filtered/unfiltered assemblies I;d love to know about it. Jim ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
