On 26/04/13 11:37 AM, Marpaud@Gmail wrote: > Bonjour, > > j'ai lu le document concernant en partie les optimal read markers, > cependant sans la présentation orale correspondante, j'ai un peu de mal à > bien saisir tout le contenu.
> Translated question: what are optimal read markers ? Optimal read markers are read markers as described by Daniel Zerbino in his PhD thesis. => http://www.ebi.ac.uk/sites/ebi.ac.uk/files/shared/documents/phdtheses/daniel_zerbino.pdf => http://www.homolog.us/blogs/2013/01/05/optimal-assembly-for-high-throughput-shotgun-sequencing/ > > En termes d'algorithme, vais-je devoir éplucher le code de RAY "ligne par > ligne" ou bien existe-t-il une base plus digeste dont je pourrai me servir > pour mon travail ? > > Translated question: Is it a good idea to read the source code to get a grip > on Ray's algorithms ? No. You should get acquainted first with de novo genome assembly. A seminal work in the field include: * http://www.pnas.org/content/98/17/9748.full A nice and accessible review: * http://www.nature.com/nmeth/journal/v6/n11s/abs/nmeth.1376.html Then, you can read the Ray-related papers: * http://genomebiology.com/2012/13/12/R122 * http://online.liebertpub.com/doi/abs/10.1089/cmb.2009.0238 > Cordialement. > -Sébastien ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
