On 27/05/13 02:28 PM, Louis Letourneau wrote: > Hello, > I have a 5kb mate pair library and looking into the > LibraryStatistics.txt file I have: > > Peak 0 > AverageOuterDistance: 196 > StandardDeviation: 102 > DetectionFailure: Yes > Peak 1 > AverageOuterDistance: 3967 > StandardDeviation: 23 > > > If there is a DetectionFailure (on the small pairs, so not interesting > for me) does the bigger insert reads still get used or is the whole > library ignored from the rest of the assembly?
During the graph traversal to build contigs, observed distances are matched against all available peaks. For the scaffolding, the largest is used. > > ray-2.2.0 > > Thanks > Louis > > ------------------------------------------------------------------------------ > Try New Relic Now & We'll Send You this Cool Shirt > New Relic is the only SaaS-based application performance monitoring service > that delivers powerful full stack analytics. Optimize and monitor your > browser, app, & servers with just a few lines of code. Try New Relic > and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_may > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ Introducing AppDynamics Lite, a free troubleshooting tool for Java/.NET Get 100% visibility into your production application - at no cost. Code-level diagnostics for performance bottlenecks with <2% overhead Download for free and get started troubleshooting in minutes. http://p.sf.net/sfu/appdyn_d2d_ap1 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
