On 07/07/13 07:29 PM, Rick White wrote: > --Note for ubuntu users-- > If you install sudo apt-get install libcr-dev mpich2 mpich2-doccd > It will cause problems with you compile your Ray install with mpich2 > > --To avoid to this-- > sudo apt-get install -y autotools-dev g++ build-essential > sudo apt-get remove libcr-dev mpich2 mpich2-doccd > sudo apt-get install libopenmpi-dev openmpi-bin openmpi-doc (mpiexec > (OpenRTE) 1.4.3) > make PREFIX=/usr/local/bin/ray- > build > sudo make install > Add folder containing Ray to .bashrc with gedit .bashrc > source ./.bashrc > > This worked on got it running again > > Having tried it with 1.5.3 OpenMPI yet. > > -- > Richard Allen White III M.S. > PhD Candidate - Suttle Lab > Department of Microbiology & Immunology > The University of British Columbia > Vancouver, BC, Canada > cell. 604-440-5150 > http://www.ocgy.ubc.ca/~suttle/ <http://www.ocgy.ubc.ca/%7Esuttle/> > >
That's good to know ! MPI packages on Fedora use the module command so it is quite hard to mix MPI libraries: $ module avail mpi/ ------------------------------------------------------------------------------------------------- /etc/modulefiles -------------------------------------------------------------------------------------------------- mpi/mpich2-x86_64 mpi/openmpi-x86_64 For instance, to use mpich2: $ module load mpi/mpich2-x86_64 ------------------------------------------------------------------------------ This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
