On 24/08/13 09:24 AM, Casey,Richard wrote: > Hi, > > We're running Ray for denovo assembly of several genomes. The "-amos" option > generates an AMOS.afg file. Apparently the AFG file contains the same > contigs as in file Contigs.fasta, is that right? Is there an option to > create an AFG file that contains scaffolds, like the Scaffolds.fasta file?
No, there is no option to put the scaffolds in the AFG file at the moment. > > > ---------------------------- > Richard Casey, PhD > CSU > Ph: 970-492-4127 > Cell: 970-980-5975 > [email protected] > > > ------------------------------------------------------------------------------ > Introducing Performance Central, a new site from SourceForge and > AppDynamics. Performance Central is your source for news, insights, > analysis and resources for efficient Application Performance Management. > Visit us today! > http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
