I believe it would be very related to the genome size. Amount of reads
can usually be useful in estimating memory usage. But execution time, I
don't know if that is possible without a genome size, and for you that
would be all genome sized added up from your metagenome.
I am curious to what others have to say.
Adrian
On 11/6/2013 9:49 AM, Goor Sasson wrote:
Dear Mailing-List,
I've chosen to use Ray Meta in order to assemble reads from a pooled
metagenome that contains 2.5g of illumina (HiSeq2500) paired-end reads
(read length 100bp, totalling ~250g bp).
I need an gross estimation for the predicted execution time. The
computational platform is a Blacklight platform with ~400 cores (Xeon
X7542) with 2TB RAM.
Thanks
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