Hello again,
I'm now working on the biological abundance analysis part and got some
questions about the outputs that I'm getting. I'm using
the NCBI-Finished-Bacterial-Genomes definitions (NCBI-Taxonomy) that you
are suggesting in your manual.
My question is how do you make these final result files :
OUTPUT/BiologicalAbundances/0.Profile.NCBI-Finished-Bacterial-Genomes.tsv
and
OUTPUT/BiologicalAbundances/0.Profile.TaxonomyRank=species.tsv
When I choose my 2 difference "minimumContigLengths" parameters of 100 and
500, the 0.Profile.TaxonomyRank=species.tsv files are the same in both
analyses but the other files, 0.Profile.NCBI-Finished-Bacterial-Genomes.tsv
aren't...
What information is combined in order to form that particular file and why
does my two other files are exactly the same?
Thanks!
--
Jean-Christophe Grenier, M.Sc.
-----------------------------------------
*Bio-informaticien*
*Laboratoire de Philip Awadalla*
*Laboratoire de Luis Barreiro*
*CHU Sainte-Justine*
3175, Côte Sainte-Catherine, local B-607
*Tél : 514-345-4931 poste 5199*
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