On 15/11/13 05:37 AM, Hornung, Bastian wrote: > Hi @all, > > I wonder what's the highest kmer-value, which ray can utilize. > I know that by default it's 30something. > I've compiled now versions with a way higher kmer-value (200, 500), because I > have MiSeq data with a read length of 250. > But I somehow get crashes, if I get higher than a certain kmer-value. > I began testing with 99, which doesn't work, 55 doesn't work either, 44 works > (I know, should be uneven, was my mistake), so I'm curious what's the highest > value. > And should it not work with more? Why do I get a segmentation fault with > higher values? >
I personnally used MAXKMERLENGTH=96 on some of our local MiSeq data (read length is 150 I think). And it worked as far as I remember. What message are you getting ? seb > Best regards, > > Bastian > > > ------------------------------------------------------------------------------ > DreamFactory - Open Source REST & JSON Services for HTML5 & Native Apps > OAuth, Users, Roles, SQL, NoSQL, BLOB Storage and External API Access > Free app hosting. Or install the open source package on any LAMP server. > Sign up and see examples for AngularJS, jQuery, Sencha Touch and Native! > http://pubads.g.doubleclick.net/gampad/clk?id=63469471&iu=/4140/ostg.clktrk > _______________________________________________ > Denovoassembler-users mailing list > Denovoassembler-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ DreamFactory - Open Source REST & JSON Services for HTML5 & Native Apps OAuth, Users, Roles, SQL, NoSQL, BLOB Storage and External API Access Free app hosting. Or install the open source package on any LAMP server. Sign up and see examples for AngularJS, jQuery, Sencha Touch and Native! http://pubads.g.doubleclick.net/gampad/clk?id=63469471&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
