thanks
> On 19/11/13 04:49 AM, Francois Le Fevre IG wrote:
>> Dear ray community,
>> I would like to know if ray is able to take as input both paired end
>> files (option -p ) and single read ( -s), for the singleton reads that
>> do not match with quality filter.
>> Thanks
>> Francois
>>
>
> Yes. And your paired files must have the same number of entries. In 
> your case,
> your single-end file should contain any read pair not matching your 
> quality
> filter.
>
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