On 26/11/13 02:22 PM, Rick White wrote: > I have some 200bp Ion Torrent Mate Pair data, Paired 250x2 MiSeq reads and > have merged the overlapping reads from the Illumina data. > > When I try to run standard parameters in Ray the assemblies are worse with > the addition of the Ion Data. > > Do you have parameters that could help me out? >
I don't. It may be due to homopolymers. By the way, Ray will perform better with unmerged paired reads. Did you try unmerged paired Illumina reads too ? > Cheers > Rick > > -- > Richard Allen White III M.S. > PhD Candidate - Suttle Lab > Department of Microbiology & Immunology > The University of British Columbia > Vancouver, BC, Canada > cell. 604-440-5150 > http://www.ocgy.ubc.ca/~suttle/ <http://www.ocgy.ubc.ca/%7Esuttle/> > > ------------------------------------------------------------------------------ Sponsored by Intel(R) XDK Develop, test and display web and hybrid apps with a single code base. Download it for free now! http://pubads.g.doubleclick.net/gampad/clk?id=111408631&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
