On 28/12/13 04:13 AM, Sucheta Tripathy wrote: > Hi Sebastian, > > We tried as you suggested, but we still get the following error:
You may need to do a "make clean" before. > > error details. > > ar: RayPlatform/memory/ReusableMemoryStore.o: No such file or directory > make[1]: *** [libRayPlatform.a] Error 1 > make[1]: Leaving directory `/app/setups/Ray-2.3.0/RayPlatform' > make: *** [RayPlatform/libRayPlatform.a] Error 2 > > Sucheta > > > On Sat, Dec 28, 2013 at 7:41 AM, Sébastien Boisvert > <sebastien.boisver...@ulaval.ca <mailto:sebastien.boisver...@ulaval.ca>> > wrote: > > On 26/12/13 04:21 AM, Sucheta Tripathy wrote: > > We found the following solution for Ray 2.3.0 installation on our HPC > cluster: > > PREFIX=Build INTEL_COMPILER=y. we are getting following error > > However, we still have the following error. Any pointers in solving > this issue of installing Ray on our HPC server? > > [root@login1 Ray-2.3.0]# make PREFIX=Build INTEL_COMPILER=y > CXX code/application_core/ray___main.o > /app/intel/impi/4.1.0.024/__intel64/include/mpicxx.h(95) > <http://4.1.0.024/intel64/include/mpicxx.h(95)> > <http://4.1.0.20/intel64/__include/mpicxx.h(95) > <http://4.1.0.20/intel64/include/mpicxx.h(95)>>: catastrophic > > error: #error directive: "SEEK_SET is #defined but must not be for > the C++ > binding of MPI. Include mpi.h before stdio.h" > > > Hi, > > You can add -DMPICH_IGNORE_CXX_SEEK to your CXXFLAGS. This is a known > problem with the Intel > compiler I think. > > Something like this should work: > > > make CXXFLAGS=" -DMPICH_IGNORE_CXX_SEEK -xHOST -O3 -Wall" > > > Good luck. > > > #error "SEEK_SET is #defined but must not be for the C++ binding > of MPI. > Include mpi.h before stdio.h" > ^ > > compilation aborted for code/application_core/ray___main.cpp (code 4) > make: *** [code/application_core/ray___main.o] Error 4 > [root@login1 Ray-2.3.0]# > > -- > Sucheta Tripathy, Ph.D > Scientist, Ramalingaswamy Fellow, > Indian Institute of Chemical Biology, > Kolkata, India. > https://sites.google.com/site/__suchetalab/ > <https://sites.google.com/site/suchetalab/> > https://twitter.com/tsucheta > > > > > > -- > Sucheta Tripathy, Ph.D > Scientist, Ramalingaswamy Fellow, > Indian Institute of Chemical Biology, > Kolkata, India. > https://sites.google.com/site/suchetalab/ > https://twitter.com/tsucheta ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
