On 14/01/14 09:25 AM, Sara El-Metwally wrote: > > Dear Professor Boisvert,
I am a PhD student and I will defend my thesis in 2 months. > Iam Phd. student at Faculty of Computers& Information Sciences,Mansoura > University.Egypt. > Iam Writing an article review about Next-Generation Sequence Assemblers and I > want to verify the following issues regarding Ray, > Assembler Name: Ray > Official Website: http://denovoassembler.sourceforge.net/ > Operating System: Linux I think it works on Mac too, so you can say POSIX. > Programming Language that used to code assembler: c++ C++, yes. And it uses a standard called MPI for message passing interface. > running on Single/Cluster Machine and supercomputers too > Open Source Assembler License: GPLv3 > Sequencing Platforms: 454,illumina/Solexa Illumina, 454 Mainly Illumina though. > Input File Format: fasta, > fa,fasta.gz,fa.gz,fasta.bz2,fastq,fastq.gz,fastq.bz2,fq.bz2, export.txt, > qseq.txt, .sff,csfasta,csfa You can remove csfasta since the color space support is dodgy. > Output File Format: .fasta .txt AMOS.afg > Genome/Transcriptome/Metagenome assembler Transcriptome support is not proved, but yes it works > assemble Procaryoutic / Eucaryoutic genomes Prokaryotic, Eukaryotic works with virus genomes too > deals with paired end reads > Thank you very much > > *Sara El-Sayed Youssef El-Metwally, MSc.* > *PhD Student,* > *Computer Science Department,* > *Faculty of Computer and Information Sciences,* > *Mansoura University,Egypt. * > ** > *Assistant Lecturer, * > *The 2012 Google Anita Borg Egypt Scholar. * > *http://www.google.com/anitaborg/emea/winners.html* > *http://sara-elmetwally.blogspot.com/* > *http://afnaneljana.blogspot.com/*** > ** ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
