On 23 janvier 2014 14:05, François Olivier Gagnon-Hébert wrote:
> À : Sébastien Boisvert
> Objet : Re: Problem compiling Ray 2.3.0 - Mac OS X 9.2
> 
> Well, actually, I don’t really know. Open MPI was successfully installed, as 
> well as Xcode and GNU compilers.
> 
> I am a little bit lost here.



Can you provide the version of gcc you are using (gcc --version in your 
terminal).


I will test that version (I don't use a Mac, but I can try the same gcc version 
that you are using).



> 
> Le 2014-01-23 à 17:34, Sébastien Boisvert <sebastien.boisver...@ulaval.ca> a 
> écrit :
> 
>>
>> On 23 janvier 2014 12:27, François Olivier Gagnon-Hébert 
>> [francois-olivier.gagnon-heber...@ulaval.ca] wrote:
>>> À : denovoassembler-users@lists.sourceforge.net
>>> Objet : [Denovoassembler-users] Problem compiling Ray 2.3.0 - Mac OS X 9.2
>>>
>>> Hi,
>>>
>>> I am trying to compile Ray 2.3.0 with Mac OS X (mavericks) 9.2 and I get 
>>> this error :
>>>
>>>
>>
>> Another Mac user had this problem recently.
>>
>>
>> Which compiler are you using on your Mac ?
>>
>>>
>>> ************************************************************************************************************************************
>>> make PREFIX=ray-build MAXKMERLENGHT=64
>>> CXX code/SeedingData/PathHandle.o
>>> code/SeedingData/PathHandle.cpp:66:9: error: use of overloaded operator 
>>> '>>' is ambiguous (with operand types
>>>     'ostream' (aka 'basic_ostream<char>') and 'const uint64_t' (aka 'const 
>>> unsigned long long'))
>>>       stream >> handle.m_value;
>>>       ~~~~~~ ^  ~~~~~~~~~~~~~~
>>> code/SeedingData/PathHandle.cpp:65:11: note: candidate function
>>> ostream & operator >>(ostream & stream, const PathHandle & handle) {
>>>         ^
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, unsigned long long)
>>>       stream >> handle.m_value;
>>>              ^
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(int, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, unsigned long
>>>     long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, unsigned long
>>>     long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, unsigned long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, unsigned long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, unsigned long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, unsigned long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, unsigned long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long long, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(__int128, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned int, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long, unsigned __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned long long, unsigned
>>>     __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, long long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, __int128)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, unsigned int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, unsigned long)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(long, int)
>>> code/SeedingData/PathHandle.cpp:66:9: note: built-in candidate 
>>> operator>>(unsigned __int128, unsigned __int128)
>>> 1 error generated.
>>> make: *** [code/SeedingData/PathHandle.o] Error 1
>>>
>>> ************************************************************************************************************************************
>>>
>>> I’ve been able to compile it successfully on my other Mac, which is less 
>>> recent and still has the previous version of Mac OSX. Maybe it has 
>>> something to do with Mavericks (it has happened to me with other programs 
>>> recently). I’ve tried to look on forums, but I can’t find anything related 
>>> to this specific problem. My apologies if it has been answered already.
>>>
>>> Can someone help me ?
>>>
>>> Thanks a lot,
>>> Olivier
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> 

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